Update all packages in the current environment to the latest version, without prompts for permission:
update.packages(ask = FALSE)
Install IRkernel for all users:
install.packages('IRkernel', lib = '/usr/local/lib/R/site-library')
Make the IRkernel available to Jupyter. For system-wide installation, set user to False in the installspec command:
IRkernel::installspec(user = FALSE)
When ready, quit:
💡 Install tidyverse and other packages
Additional Ubuntu linux packages are needed for 'tidyverse' in R. In Ubuntu terminal:
apt install libssl-dev libcurl4-openssl-dev unixodbc-dev libxml2-dev libmariadb-dev libfontconfig1-dev libharfbuzz-dev libfribidi-dev libfreetype6-dev libpng-dev libtiff5-dev libjpeg-dev
In R, install tidyverse for all users:
install.packages("tidyverse", dependencies = TRUE, INSTALL_opts = '--no-lock')
There are other useful R packages that one can install, for example:
install.packages("openxlsx", lib = '/usr/local/lib/R/site-library', dependencies = TRUE, INSTALL_opts = '--no-lock')
install.packages("knitr", lib = '/usr/local/lib/R/site-library', dependencies = TRUE, INSTALL_opts = '--no-lock')
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